Pivot a selected omics dataset from a MultiAssayExperiment into tidybulk format
Source:R/pivot_exp.R
pivot_exp.Rd
Extracts a specified omics dataset from a MultiAssayExperiment
, optionally
filters by feature (row) names, and returns a tidy tibble in the structure of
tidybulk::tidybulk()
. The output includes assay values along with
sample metadata (from colData
) and feature metadata (from rowData
).
Value
A tibble in tidybulk format with one row per feature/sample pair, including all metadata and a new column exp_name
indicating the assay source.
Examples
if (FALSE) { # \dontrun{
# Extract and tidy proteomics for selected features
tidy_df <- pivot_exp(my_mae, omics_name = "Proteomics", features = c("CCT5", "TAF7"))
} # }