Changelog

Source: NEWS.md

tidyexposomics 0.99.14

• Fixed extract top factor features MCIA factor mapping.
• Updated Zenodo download to incorporate a checksums validation.

tidyexposomics 0.99.13

• Fixed run_association function to take factors from MCIA.
• Added function to perform pairwise exposure-omics association testing.

tidyexposomics 0.99.12

• Removing .Rproj.user directory.

tidyexposomics 0.99.11

• Setting nipalsMCIA to suggests due to nipalsMCIA RMD check failures.

tidyexposomics 0.99.10

• Fixed set.seed() to make network plots consistent within vignette.
• Fixed issue with impute exposure logic.
• Updated naming conventions for variable maps.

tidyexposomics 0.99.9

• Added set.seed() to make network plots consistent.
• Updated vignette formatting and PCA documentation.

tidyexposomics 0.99.8

• Added BiocFileCache-based caching and removed globalenv assignments.
• Swithced to small example data for vignette and added figure captions.
• Added MultiAssayExperiment to Depends.
• Standardized MIT license file.
• Updated pipeline summary output.

tidyexposomics 0.99.5/0.99.6/0.99.7

• Removed .Rproj tracking, .gitignore lines.
• Updated testing strategy.
• Modified dependency to 4.5.0.
• Added vignette chunk labels.

tidyexposomics 0.99.2/0.99.3/0.99.4

• Updated namespace issues with tidybulk.

tidyexposomics 0.99.1

• Updated variable language for consistency.
• Pre-build objects for vignette run time.
• Updated circos plot visuals.
• Updated network functions to create unique node names.

tidyexposomics 0.99.0

• Initial Bioconductor submission.
• Implements a full exposome-omics pipeline including:
  • Quality control
  • Association analysis
  • Differential abundance analysis
  • Multi-omics integration analysis
  • Functional enrichment analysis
  • Vizualization