Plot Sensitivity Analysis Summary — plot_sensitivity

Generates a ridge plot and bar chart summarizing feature stability scores across assays.

Usage

plot_sensitivity_summary(
  expomicset,
  stability_score_thresh = NULL,
  stability_metric = "stability_score",
  title = "Distribution of Stability Scores"
)

Arguments

expomicset: A MultiAssayExperiment object containing sensitivity analysis results in metadata(expomicset)$sensitivity_analysis.
stability_score_thresh: A numeric threshold for stability scores. Default is NULL, which uses the threshold stored in metadata(expomicset)$sensitivity_analysis$score_thresh.
stability_metric: A character string specifying which stability metric to plot (e.g., "stability_score", "logp_weighted_score"). Default is "stability_score".
title: A character string specifying the title of the ridge plot. Default is "Distribution of Stability Scores".

Value

A patchwork object combining a ridge plot and a bar chart.

Details

This function:

Extracts feature stability scores from metadata(expomicset)$sensitivity_analysis$feature_stability.
Displays a ridge plot of stability score distributions per assay.
Displays a bar chart of the number of features per assay.
Prints the number of features with stability scores above the threshold.

Examples

if (FALSE) { # \dontrun{
plot_sensitivity_summary(expom, stability_metric = "logp_weighted_score")
} # }